Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KICH | rs66866015 | chr13:82102840 | AG/A | 6.13E-7 | 64 | 64.83 | 53.87 | 16.9 | KM Plot |
KICH | rs6709507 | chr2:11601204 | A/G | 1.42E-8 | 65 | 19.67 | 32.18 | 67.47 | KM Plot |
KICH | rs6714745 | chr2:64060730 | A/G | 4.66E-7 | 65 | 64.83 | 89.13 | 16.9 | KM Plot |
KICH | rs67568513 | chr2:13931646 | T/A | 7.07E-7 | 63 | 62.43 | 89.13 | 16.9 | KM Plot |
KICH | rs68019520 | chr2:13933015 | C/T | 7.07E-7 | 63 | 62.43 | 89.13 | 16.9 | KM Plot |
KICH | rs6994515 | chr8:124099486 | T/G | 5.97E-7 | 64 | 66.1 | 66.97 | 16.9 | KM Plot |
KICH | rs7084778 | chr10:119564966 | A/G | 2.91E-7 | 62 | 30.67 | 10.83 | 68.13 | KM Plot |
KICH | rs7115475 | chr11:6610046 | A/G | 3.41E-14 | 65 | 66.1 | 78.53 | 7.22 | KM Plot |
KICH | rs7126373 | chr11:105629923 | G/A | 0.00013 | 65 | 68.8 | 63.23 | 25.13 | KM Plot |
KICH | rs7190558 | chr16:2874496 | C/T | 0.000266 | 65 | 34.63 | 77.97 | 59.23 | KM Plot |
KICH | rs72731240 | chr1:181485103 | A/G | 8.48E-8 | 62 | 66.78 | 60.38 | 19.67 | KM Plot |
KICH | rs72747519 | chr9:109865994 | A/G | 5.21E-7 | 65 | 66.78 | 57.75 | 16.9 | KM Plot |
KICH | rs72777437 | chr2:13929529 | T/C | 5.56E-7 | 64 | 64.03 | 89.13 | 16.9 | KM Plot |
KICH | rs72777438 | chr2:13931759 | T/C | 7.07E-7 | 63 | 62.43 | 89.13 | 16.9 | KM Plot |
KICH | rs72889399 | chr2:64022346 | A/C | 4.28E-7 | 64 | 66.78 | 30.67 | 16.9 | KM Plot |